Pseudomonas syringae pv. tomato DC3000, PSPTO_3045

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3045
NCBI Old Locus Tag	PSPTO3045
Name	Synonym: PSPTO3045
Replicon	chromosome
Genomic location	3425515 - 3425703 (- strand)

Cross-References

RefSeq	NP_792839.1
GI	28870220
Entrez	1184702
INSDC	AAO56534.1
NCBI Locus Tag	PSPTO_3045
NCBI Old Locus Tag	PSPTO3045
UniParc	UPI0000008DE4
UniProtKB Acc	Q880V6
UniProtKB ID	Q880V6_PSESM
UniRef100	UniRef100_Q880V6
UniRef50	UniRef50_I3W0I1
UniRef90	UniRef90_Q880V6

Product

Feature Type	CDS
Coding Frame	1
Product Name	ISPsy12, transposase OrfA
Synonyms
Evidence for Translation
Charge (pH 7)	2.99
Kyte-Doolittle Hydrophobicity Value	-0.968
Molecular Weight (kDa)	7.3
Isoelectric Point (pI)	10.59

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 51 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018170 (2 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3045 Search term: ISPsy12, transposase OrfA

Human Homologs

References