Pseudomonas syringae pv. tomato DC3000, PSPTO_3237

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00304 HAMP_11 IPR003660 HAMP domain 439 493 1.5E-5
CDD cd18774 PDC2_HK_sensor - - 307 405 5.73833E-6
CDD cd11386 MCP_signal - - 535 730 2.80421E-56
Gene3D G3DSA:1.10.287.950 - - - 439 771 5.6E-64
Coils Coil Coil - - 576 596 -
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
MobiDBLite mobidb-lite consensus disorder prediction - - 1 16 -
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 323 770 2.7E-96
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 560 736 5.8E-39
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 227 402 5.5E-17
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 508 769 4.9E-66
CDD cd06225 HAMP - - 455 488 0.00659742
Pfam PF00672 HAMP domain IPR003660 HAMP domain 438 489 5.3E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 143 312 2.0E-15
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 439 770 2.6E-85
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 461 770 1.44E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.