Pseudomonas syringae pv. tomato DC3000, PSPTO_4104

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016817 hydrolase activity, acting on acid anhydrides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12137
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01821
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00176
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140658 ATP-dependent chromatin remodeler activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00176
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF18337 RapA N-terminal Tudor like domain IPR040766 RapA, N-terminal Tudor-like domain 2 57 118 5.4E-21
Pfam PF00176 SNF2-related domain IPR000330 SNF2, N-terminal 119 346 2.9E-16
Gene3D G3DSA:3.40.50.10810 - IPR038718 SNF2-like, N-terminal domain superfamily 150 423 5.7E-92
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 271 631 1.12E-39
Gene3D G3DSA:3.30.360.80 - - - 696 772 4.3E-32
Gene3D G3DSA:2.30.30.930 - - - 57 114 5.9E-19
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 138 356 6.39E-33
Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. IPR023949 RNA polymerase-associated protein RapA 3 948 27.934744
PANTHER PTHR45766 DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER - - 171 339 2.5E-31
Coils Coil Coil - - 886 906 -
CDD cd18793 SF2_C_SNF - - 471 592 1.1027E-23
Coils Coil Coil - - 642 669 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 500 584 2.8E-13
CDD cd18011 DEXDc_RapA - - 154 346 9.38017E-58
Gene3D G3DSA:6.10.140.2230 - - - 617 667 2.6E-8
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 475 584 3.1E-12
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 150 340 7.2E-15
Gene3D G3DSA:2.30.30.140 - - - 3 55 6.9E-24
Pfam PF18339 RapA N-terminal Tudor like domain 1 IPR040765 RapA, N-terminal Tudor like domain 1 5 55 2.5E-23
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 424 616 5.3E-43
Pfam PF12137 RNA polymerase recycling family C-terminal IPR022737 RNA polymerase recycling, bacterial, C-terminal 589 946 0.0
Gene3D G3DSA:6.10.140.1500 - - - 856 935 1.7E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.