Pseudomonas syringae pv. tomato DC3000, PSPTO_4106

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03707 Bacterial signalling protein N terminal repeat IPR005330 MHYT domain 66 120 2.6E-13
SMART SM00267 duf1_3 IPR000160 GGDEF domain 272 443 3.3E-64
MobiDBLite mobidb-lite consensus disorder prediction - - 728 756 -
Pfam PF03707 Bacterial signalling protein N terminal repeat IPR005330 MHYT domain 127 176 2.0E-11
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 288 445 3.01E-51
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 278 444 2.7E-47
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 279 442 3.9E-47
Pfam PF00563 EAL domain IPR001633 EAL domain 459 695 5.4E-74
Coils Coil Coil - - 255 275 -
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 223 711 0.0
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 454 716 6.1E-98
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 459 709 3.92E-87
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 283 439 1.4E-49
CDD cd01949 GGDEF IPR000160 GGDEF domain 284 440 5.84092E-65
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 273 446 8.2E-59
SMART SM00052 duf2_2 IPR001633 EAL domain 453 700 4.8E-106
CDD cd01948 EAL IPR001633 EAL domain 462 700 2.58156E-109

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.