Pseudomonas syringae pv. tomato DC3000, PSPTO_4116 (pdxH)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4116
NCBI Old Locus Tag	PSPTO4116
Name	pdxH Synonym: PSPTO4116
Replicon	chromosome
Genomic location	4640275 - 4640922 (- strand)

Cross-References

RefSeq	NP_793877.1
GI	28871258
Entrez	1185796
INSDC	AAO57572.1
NCBI Locus Tag	PSPTO_4116
NCBI Old Locus Tag	PSPTO4116
UniParc	UPI00000091CC
UniProtKB Acc	Q87XR0
UniProtKB ID	PDXH_PSESM
UniRef100	UniRef100_Q87XR0
UniRef50	UniRef50_A2SJZ5
UniRef90	UniRef90_Q87XR0

Product

Feature Type	CDS
Coding Frame	1
Product Name	pyridoxamine 5'-phosphate oxidase
Synonyms
Evidence for Translation
Charge (pH 7)	-0.62
Kyte-Doolittle Hydrophobicity Value	-0.671
Molecular Weight (kDa)	24.9
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 351 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001011 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4116 Search term: pdxH Search term: pyridoxamine 5'-phosphate oxidase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000493302 pyridoxamine 5'-phosphate oxidase [Source:HGNC Symbol;Acc:HGNC:30260] E-value: 3.3e-45 Percent Identity: 45.5

References