Pseudomonas syringae pv. tomato DC3000, PSPTO_5468

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5468
NCBI Old Locus Tag	PSPTO5468
Name	Synonym: PSPTO5468
Replicon	chromosome
Genomic location	6229490 - 6229795 (+ strand)

Cross-References

RefSeq	NP_795192.1
GI	28872573
Entrez	1187160
INSDC	AAO58887.1
NCBI Locus Tag	PSPTO_5468
NCBI Old Locus Tag	PSPTO5468
UniParc	UPI00000096B8
UniProtKB Acc	Q87U47
UniProtKB ID	Q87U47_PSESM
UniRef100	UniRef100_Q87U47
UniRef50	UniRef50_G8PY86
UniRef90	UniRef90_Q87U47

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.46
Kyte-Doolittle Hydrophobicity Value	0.587
Molecular Weight (kDa)	10.6
Isoelectric Point (pI)	7.70

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 6 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005007 (511 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5468

Human Homologs

References