Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0444

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF015601
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF015601
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00046 JCVI: RsmE family RNA methyltransferase IPR006700 Ribosomal RNA small subunit methyltransferase E 19 237 2.8E-64
PIRSF PIRSF015601 MTase_slr0722 IPR006700 Ribosomal RNA small subunit methyltransferase E 4 238 2.5E-59
Gene3D G3DSA:3.40.1280.10 - IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal 73 239 3.1E-63
Pfam PF04452 RNA methyltransferase domain IPR046886 Ribosomal RNA small subunit methyltransferase E, methyltransferase domain 75 233 6.6E-55
Gene3D G3DSA:2.40.240.20 - - - 1 68 1.0E-20
SUPERFAMILY SSF88697 PUA domain-like IPR015947 PUA-like superfamily 3 67 1.69E-14
Pfam PF20260 RNA methyltransferase PUA domain IPR046887 Ribosomal RNA small subunit methyltransferase E, PUA-like domain 19 65 1.3E-13
PANTHER PTHR30027 RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E IPR006700 Ribosomal RNA small subunit methyltransferase E 3 233 3.1E-57
CDD cd18084 RsmE-like IPR046886 Ribosomal RNA small subunit methyltransferase E, methyltransferase domain 79 232 7.25769E-69
SUPERFAMILY SSF75217 alpha/beta knot IPR029028 Alpha/beta knot methyltransferases 73 238 1.92E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.