Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1393
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 95 | 152 | 6.74763E-7 |
| SUPERFAMILY | SSF51306 | LexA/Signal peptidase | IPR036286 | LexA/Signal peptidase-like superfamily | 178 | 303 | 1.27E-24 |
| Gene3D | G3DSA:2.10.109.10 | Umud Fragment, subunit A | - | - | 175 | 303 | 6.0E-35 |
| CDD | cd06529 | S24_LexA-like | IPR039418 | LexA-like | 218 | 302 | 6.09315E-20 |
| Pfam | PF00717 | Peptidase S24-like | IPR015927 | Peptidase S24/S26A/S26B/S26C | 181 | 302 | 5.0E-27 |
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 101 | 152 | 1.9E-6 |
| SUPERFAMILY | SSF47413 | lambda repressor-like DNA-binding domains | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 84 | 158 | 5.0E-8 |
| PANTHER | PTHR33516 | LEXA REPRESSOR | - | - | 91 | 304 | 5.9E-23 |
| Gene3D | G3DSA:1.10.260.40 | - | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 90 | 162 | 2.1E-10 |
| SMART | SM00530 | mbf_short4 | IPR001387 | Cro/C1-type helix-turn-helix domain | 96 | 152 | 9.4E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.