Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2291

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43386 OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC - - 45 307 5.1E-75
FunFam G3DSA:1.10.3720.10:FF:000073 Nickel ABC transporter permease - - 104 308 5.2E-127
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 110 295 1.07E-24
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 131 301 5.9E-26
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 116 295 3.25052E-15
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 105 308 4.7E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.