Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2292 (nikB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.3720.10:FF:000107 Nickel ABC transporter, permease protein - - 90 304 0.0
Pfam PF19300 Binding-prot-dependent transport system membrane comp, N-term IPR045621 ABC transporter type 1, GsiC-like, N-terminal domain 1 108 4.2E-7
PANTHER PTHR43163 DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED - - 1 311 2.1E-85
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 90 304 3.3E-21
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 119 310 5.9E-30
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 101 260 1.40565E-13
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 96 295 2.09E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.