Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2293

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08492 PBP2_NikA_DppA_OppA_like_15 - - 36 525 0.0
FunFam G3DSA:3.10.105.10:FF:000037 Nickel ABC transporter periplasmic nickel-binding protein - - 293 511 0.0
FunFam G3DSA:3.40.190.10:FF:000333 Nickel ABC transporter, periplasmic nickel-binding protein - - 16 282 6.3E-121
Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPR000914 Solute-binding protein family 5 domain 80 439 3.3E-63
Gene3D G3DSA:3.40.190.10 - - - 26 278 9.7E-51
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 36 540 3.8E-96
PANTHER PTHR30290 PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER IPR039424 Solute-binding protein family 5 3 527 3.4E-73
PIRSF PIRSF002741 MppA IPR030678 Peptide/nickel binding protein, MppA-type 4 542 2.5E-61
Gene3D G3DSA:3.10.105.10 - - - 293 511 4.9E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.