Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2908
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 103 | 254 | 6.7E-34 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 415 | 575 | 6.67E-46 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 257 | 344 | 1.7E-18 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 399 | 575 | 1.5E-59 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 404 | 576 | 1.2E-53 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 134 | 254 | 3.02197E-25 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 396 | 576 | 1.5E-55 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 411 | 571 | 6.3E-47 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 79 | 579 | 6.6E-76 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 413 | 572 | 4.01174E-61 |
| SUPERFAMILY | SSF103190 | Sensory domain-like | IPR029151 | Periplasmic sensor-like domain superfamily | 173 | 265 | 1.14E-5 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 406 | 575 | 3.0E-50 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 258 | 353 | 2.61749E-19 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.