Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4646

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51182 IPR011051 RmlC-like cupin domain superfamily 24 193 1.63E-20
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 190 265 3.1E-21
Gene3D G3DSA:1.10.10.60 169 267 8.5E-20
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 41 151 1.1E-6
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 168 267 22.967
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 26 120 2.3E-6
MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 184 266 1.8E-22
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 221 265 7.17E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.