Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4694
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00530 | mbf_short4 | IPR001387 | Cro/C1-type helix-turn-helix domain | 13 | 68 | 5.1E-6 |
| Pfam | PF13560 | Helix-turn-helix domain | - | - | 9 | 63 | 4.4E-7 |
| Gene3D | G3DSA:1.10.260.40 | - | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 1 | 73 | 1.4E-13 |
| SUPERFAMILY | SSF47413 | lambda repressor-like DNA-binding domains | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 6 | 68 | 3.49E-12 |
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 11 | 68 | 2.10636E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.