Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4700

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13404
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13404 AsnC-type helix-turn-helix domain IPR000485 AsnC-type HTH domain 9 50 5.0E-14
PANTHER PTHR30154 LEUCINE-RESPONSIVE REGULATORY PROTEIN - - 8 149 6.2E-29
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 8 65 1.12E-10
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 36 55 2.8E-10
SUPERFAMILY SSF54909 Dimeric alpha+beta barrel IPR011008 Dimeric alpha-beta barrel 70 150 3.49E-16
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 25 36 2.8E-10
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 9 25 2.8E-10
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 10 61 8.6E-17
Pfam PF01037 Lrp/AsnC ligand binding domain IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain 75 144 1.5E-14
Gene3D G3DSA:3.30.70.920 - - - 64 149 1.0E-17
SMART SM00344 asnc IPR019888 Transcription regulator AsnC-like 9 115 4.3E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.