Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4708 (pqqE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018189 pyrroloquinoline quinone biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02109
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02109
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc pyrroloquinoline quinone biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc molybdenum cofactor biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR04085 JCVI: SPASM domain IPR023885 4Fe4S-binding SPASM domain 263 348 1.3E-6
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 24 300 2.2E-48
CDD cd21119 SPASM_PqqE - - 253 365 1.03892E-86
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 29 184 1.7E-24
CDD cd01335 Radical_SAM - - 28 203 4.66633E-28
Pfam PF13353 4Fe-4S single cluster domain - - 32 118 5.2E-7
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 23 224 2.2E-4
Pfam PF13186 Iron-sulfur cluster-binding domain IPR023885 4Fe4S-binding SPASM domain 256 321 1.1E-7
SFLD SFLDG01067 SPASM/twitch domain containing - - 17 387 0.0
SFLD SFLDF00280 coenzyme PQQ synthesis protein E (PqqE-like) IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 17 387 0.0
PIRSF PIRSF037420 PqqE IPR017200 Coenzyme PQQ synthesis protein E-like 8 370 0.0
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 18 348 4.5E-80
Hamap MF_00660 PqqA peptide cyclase [pqqE]. IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 1 389 191.803955
NCBIfam TIGR02109 JCVI: pyrroloquinoline quinone biosynthesis protein PqqE IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 18 378 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 22 330 1.57E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.