Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_5069

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.110.50 27 345 7.4E-98
SUPERFAMILY SSF69349 453 611 4.39E-35
SUPERFAMILY SSF69279 201 374 1.36E-29
Gene3D G3DSA:3.55.50.10 106 198 7.4E-98
Pfam PF05954 Phage late control gene D protein (GPD) 38 345 7.9E-91
SUPERFAMILY SSF69279 24 194 5.33E-51
TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 23 534 0.0
Gene3D G3DSA:3.30.1920.30 232 297 7.4E-98
TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 31 516 2.2E-129
SUPERFAMILY SSF69255 377 463 3.4E-31
Gene3D G3DSA:2.40.50.230 IPR037026 Vgr protein, OB-fold domain superfamily 366 468 1.4E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.