Pseudomonas fulva 12-X, Psefu_1324

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00534
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140664 ATP-dependent DNA damage sensor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11361
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030983 mismatched DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00534
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006298 mismatch repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00534
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfv03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.1420.10 - - - 267 561 2.2E-112
NCBIfam TIGR01070 JCVI: DNA mismatch repair protein MutS IPR005748 DNA mismatch repair protein MutS 9 854 0.0
Coils Coil Coil - - 515 535 -
FunFam G3DSA:3.40.50.300:FF:000283 DNA mismatch repair protein MutS - - 568 821 3.9E-126
Pfam PF05190 MutS family domain IV IPR007861 DNA mismatch repair protein MutS, clamp 429 519 3.4E-28
CDD cd03284 ABC_MutS1 - - 580 793 1.49895E-128
FunFam G3DSA:3.30.420.110:FF:000001 DNA mismatch repair protein MutS - - 129 264 6.7E-61
Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. IPR005748 DNA mismatch repair protein MutS 9 849 25.252838
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 570 797 5.32E-57
Pfam PF05192 MutS domain III IPR007696 DNA mismatch repair protein MutS, core 272 560 2.4E-39
Gene3D G3DSA:1.10.1420.10 - - - 388 504 2.2E-112
PIRSF PIRSF037677 Msh6 IPR017261 DNA mismatch repair protein MutS/MSH 195 819 6.0E-124
SUPERFAMILY SSF55271 DNA repair protein MutS, domain I IPR016151 DNA mismatch repair protein MutS, N-terminal 4 117 9.02E-44
Pfam PF05188 MutS domain II IPR007860 DNA mismatch repair protein MutS, connector domain 130 255 2.2E-29
SUPERFAMILY SSF48334 DNA repair protein MutS, domain III IPR036187 DNA mismatch repair protein MutS, core domain superfamily 269 566 2.88E-87
SMART SM00533 DNAend IPR007696 DNA mismatch repair protein MutS, core 285 592 4.6E-111
PIRSF PIRSF037677 Msh6 IPR017261 DNA mismatch repair protein MutS/MSH 1 182 1.6E-30
Gene3D G3DSA:3.30.420.110 MutS, connector domain IPR036678 MutS, connector domain superfamily 129 263 4.0E-42
Gene3D G3DSA:3.40.1170.10 DNA repair protein MutS, domain I IPR016151 DNA mismatch repair protein MutS, N-terminal 1 123 6.4E-48
FunFam G3DSA:3.40.1170.10:FF:000001 DNA mismatch repair protein MutS - - 2 123 1.8E-57
FunFam G3DSA:1.10.1420.10:FF:000002 DNA mismatch repair protein MutS - - 388 504 5.9E-45
SMART SM00534 mutATP5 IPR000432 DNA mismatch repair protein MutS, C-terminal 608 794 1.9E-119
Pfam PF00488 MutS domain V IPR000432 DNA mismatch repair protein MutS, C-terminal 611 797 8.4E-85
Pfam PF01624 MutS domain I IPR007695 DNA mismatch repair protein MutS-like, N-terminal 10 121 8.0E-42
SUPERFAMILY SSF53150 DNA repair protein MutS, domain II IPR036678 MutS, connector domain superfamily 116 268 5.49E-43
Gene3D G3DSA:6.10.140.430 - - - 827 855 5.3E-11
PANTHER PTHR11361 DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER IPR045076 DNA mismatch repair MutS family 13 800 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 569 813 3.6E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.