Pseudomonas fulva 12-X, Psefu_2078
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfv02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfv02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 370 | 416 | 20.0 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 308 | 359 | 9.2E-9 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 311 | 640 | 3.9E-103 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 423 | 606 | 1.2E-44 |
| Coils | Coil | Coil | - | - | 446 | 466 | - |
| SMART | SM01358 | HBM_sequencesselection_2 | IPR032255 | Helical bimodular sensor domain | 33 | 289 | 4.4E-55 |
| CDD | cd11386 | MCP_signal | - | - | 405 | 600 | 2.76766E-46 |
| Pfam | PF16591 | Helical bimodular sensor domain | IPR032255 | Helical bimodular sensor domain | 33 | 287 | 6.8E-100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 416 | 435 | - |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 378 | 639 | 3.8E-88 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 124 | 639 | 2.4E-121 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 331 | 640 | 1.57E-80 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 311 | 640 | 2.5E-82 |
| CDD | cd06225 | HAMP | - | - | 314 | 358 | 1.35918E-7 |
| Gene3D | G3DSA:1.20.1440.210 | - | - | - | 44 | 159 | 1.3E-27 |
| Coils | Coil | Coil | - | - | 411 | 431 | - |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 311 | 363 | 7.7E-10 |
| Gene3D | G3DSA:1.20.1440.210 | - | - | - | 164 | 284 | 8.4E-27 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.