Pseudomonas fulva 12-X, Psefu_4195

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 153 331 2.5E-18
SUPERFAMILY SSF55781 GAF domain-like - - 183 328 8.72E-19
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 334 453 1.0E-15
CDD cd01948 EAL IPR001633 EAL domain 631 868 4.66846E-98
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 458 610 3.4E-40
Pfam PF00563 EAL domain IPR001633 EAL domain 631 866 4.4E-75
SMART SM00086 pac_2 IPR001610 PAC motif 405 447 0.0017
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 457 627 2.3E-48
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 339 445 1.42E-19
SMART SM00052 duf2_2 IPR001633 EAL domain 625 871 1.1E-117
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 626 881 1.5E-97
SMART SM00091 pas_2 IPR000014 PAS domain 14 87 17.0
Pfam PF13426 PAS domain IPR000014 PAS domain 345 446 1.0E-14
CDD cd00130 PAS IPR000014 PAS domain 342 444 9.48744E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 333 456 2.1E-26
SMART SM00267 duf1_3 IPR000160 GGDEF domain 447 615 1.2E-53
SMART SM00065 gaf_1 IPR003018 GAF domain 176 330 5.1E-9
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 463 616 8.63E-42
CDD cd01949 GGDEF IPR000160 GGDEF domain 459 611 4.82072E-52
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 630 879 1.96E-91
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 628 885 5.7E-101
SMART SM00091 pas_2 IPR000014 PAS domain 333 399 1.1E-5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 454 614 2.9E-33
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 238 877 0.0
Pfam PF01590 GAF domain IPR003018 GAF domain 183 319 1.9E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.