Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a629

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00737
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00737
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00737
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0002943 tRNA dihydrouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02042
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0017150 tRNA dihydrouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02042
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR45846 TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE - - 11 301 9.2E-74
CDD cd02801 DUS_like_FMN IPR035587 DUS-like, FMN-binding domain 15 244 2.51495E-98
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 12 243 2.5E-75
SUPERFAMILY SSF51395 FMN-linked oxidoreductases - - 14 321 8.06E-91
Gene3D G3DSA:1.10.1200.80 Putative flavin oxidoreducatase; domain 2 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal 255 326 2.3E-17
PIRSF PIRSF006621 Dus IPR001269 tRNA-dihydrouridine synthase 3 328 7.4E-106
NCBIfam TIGR00737 JCVI: tRNA dihydrouridine synthase DusB IPR004652 tRNA-dihydrouridine synthase DusB-like 6 320 2.3E-125
Pfam PF01207 Dihydrouridine synthase (Dus) IPR035587 DUS-like, FMN-binding domain 16 319 1.8E-105
Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. IPR032887 tRNA-dihydrouridine synthase B 4 324 50.651913

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.