Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a629

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a629
Name
Replicon	chromosome
Genomic location	784215 - 785222 (- strand)

Cross-References

RefSeq	YP_004351781.1
GI	330807319
Entrez	10469482
INSDC	AEA66777.1
NCBI Locus Tag	PSEBR_a629
UniParc	UPI00020418A3
UniProtKB Acc	F2KDJ9
UniProtKB ID	F2KDJ9_PSEBN
UniRef100	UniRef100_A0A0D0TF83
UniRef50	UniRef50_Q9HUW1
UniRef90	UniRef90_I2BWH3

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA-dihydrouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7)	1.33
Kyte-Doolittle Hydrophobicity Value	-0.028
Molecular Weight (kDa)	36.3
Isoelectric Point (pI)	7.55

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 563 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004481 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a629 Search term: tRNA-dihydrouridine synthase B

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000315558 dihydrouridine synthase 3 like [Source:HGNC Symbol;Acc:HGNC:26920] E-value: 3.9e-24 Percent Identity: 31.2
Ensembl 110, assembly GRCh38.p14	ENSP00000311977 dihydrouridine synthase 3 like [Source:HGNC Symbol;Acc:HGNC:26920] E-value: 3.9e-24 Percent Identity: 31.2

References