Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a654

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 219 261 6.27E-7
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 31 147 3.3E-6
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 179 261 9.2E-23
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 12 262 5.4E-82
Gene3D G3DSA:1.10.10.60 - - - 163 218 4.6E-11
CDD cd06124 cupin_NimR-like_N - - 23 117 1.75078E-31
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 185 262 5.6E-21
Gene3D G3DSA:1.10.10.60 - - - 219 263 5.6E-8
PANTHER PTHR11019:SF159 TRANSCRIPTIONAL REGULATOR-RELATED - - 12 262 5.4E-82
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 9 188 2.4E-20
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 20 103 1.2E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.