Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest |
| Locus Tag |
PSEBR_a1000
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 1269767 - 1271071 (- strand) |
Cross-References
| RefSeq | YP_004352177.1 |
| GI | 330807715 |
| Entrez | 10469887 |
| NCBI Locus Tag | PSEBR_a1000 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
formyl-CoA transferase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.39 |
| Kyte-Doolittle Hydrophobicity Value | -0.045 |
| Molecular Weight (kDa) | 47258.1 |
| Isoelectric Point (pI) | 6.42 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 311 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001950 (526 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSEBR_a1000
Search term: formyl-CoA transferase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
succinyl-CoA:glutarate-CoA transferase [Source:HGNC Symbol;Acc:HGNC:16001]
E-value:
1.6e-54
Percent Identity:
30.6
|
References
No references are associated with this feature.