Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1012

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015846 polyamine transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00909
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00909
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019808 polyamine binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00909
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13416 Bacterial extracellular solute-binding protein IPR006059 Bacterial extracellular solute-binding protein 59 331 1.2E-27
PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein 278 297 1.8E-8
Gene3D G3DSA:3.40.190.10 147 285 2.6E-59
CDD cd13588 PBP2_polyamine_1 37 332 1.79658E-135
PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein 64 85 1.8E-8
PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein 138 154 1.8E-8
Gene3D G3DSA:3.40.190.10 41 330 2.6E-59
SUPERFAMILY SSF53850 35 359 1.95E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.