Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1017

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22617
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 19 157 1.3E-26
SMART SM00260 chew_2 IPR002545 CheW-like domain 14 155 4.3E-14
Gene3D G3DSA:2.40.50.180 - - - 35 150 7.6E-17
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 19 159 2.09E-26
PANTHER PTHR22617 CHEMOTAXIS SENSOR HISTIDINE KINASE-RELATED IPR039315 Chemotaxis protein CheW 14 159 3.4E-15
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 20 149 7.6E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.