Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2099

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050304 nitrous-oxide reductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.130.10.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba00910 Nitrogen metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.130.10.10 - IPR015943 WD40/YVTN repeat-like-containing domain superfamily 65 524 0.0
Pfam PF18764 Nitrous oxide reductase propeller repeat IPR041114 Nitrous oxide reductase, propeller repeat 1 431 501 1.6E-33
CDD cd04223 N2OR_C IPR034205 Nitrous-oxide reductase, C-terminal 550 643 2.02761E-52
NCBIfam TIGR01409 JCVI: twin-arginine translocation signal domain IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal 24 52 0.0028
Hamap MF_00716 Nitrous-oxide reductase [nosZ]. IPR023644 Nitrous-oxide reductase 2 644 60.619236
SUPERFAMILY SSF50974 Nitrous oxide reductase, N-terminal domain IPR011045 Nitrous oxide reductase, N-terminal 68 513 0.0
FunFam G3DSA:2.130.10.10:FF:001102 Nitrous-oxide reductase - - 65 524 0.0
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 516 643 4.32E-35
NCBIfam TIGR04244 JCVI: TAT-dependent nitrous-oxide reductase IPR023644 Nitrous-oxide reductase 24 643 0.0
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 525 643 1.8E-37
MobiDBLite mobidb-lite consensus disorder prediction - - 1 24 -
FunFam G3DSA:2.60.40.420:FF:000095 Nitrous-oxide reductase - - 525 644 2.0E-71
MobiDBLite mobidb-lite consensus disorder prediction - - 1 17 -
Pfam PF18793 Nitrous oxide reductase propeller repeat 2 IPR041142 Nitrous oxide reductase, propeller repeat 2 178 248 2.6E-31
PANTHER PTHR42838 CYTOCHROME C OXIDASE SUBUNIT II - - 23 644 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.