Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2107

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 456 507 1.1E-9
Gene3D G3DSA:1.10.8.60 - - - 359 442 3.1E-20
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 181 358 9.7E-64
CDD cd00009 AAA - - 195 358 2.29321E-26
SMART SM00065 gaf_1 IPR003018 GAF domain 20 167 3.2E-18
SUPERFAMILY SSF55781 GAF domain-like - - 22 169 2.84E-17
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 208 351 1.6E-11
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 189 354 5.1E-66
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 136 507 6.1E-114
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 187 424 1.24E-68
Pfam PF01590 GAF domain IPR003018 GAF domain 22 155 3.7E-11
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 401 506 1.08E-6
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 182 358 1.5E-74
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 3 170 2.6E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.