Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_m716

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48295
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01527
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004803 transposase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01527
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006313 transposition, DNA-mediated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01527
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 56 4.0E-5
Pfam PF01527 Transposase IPR002514 Transposase IS3/IS911family 4 57 4.3E-10
SUPERFAMILY SSF48295 TrpR-like IPR010921 Trp repressor/replication initiator 2 47 2.56E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.