Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5187

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF028103
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd04869 ACT_GcvR_2 - - 90 170 5.92627E-28
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 1 67 1.31E-13
PIRSF PIRSF028103 GcvR IPR016867 Glycine cleavage system transcriptional repressor 1 171 3.0E-54
Gene3D G3DSA:3.30.70.260 - - - 1 78 2.8E-18
Gene3D G3DSA:3.30.70.260 - - - 83 170 1.1E-21
Coils Coil Coil - - 148 168 -
PANTHER PTHR34875 UPF0237 PROTEIN MJ1558 - - 2 170 2.7E-45
Pfam PF13740 ACT domain - - 3 67 5.0E-14
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 87 166 2.02E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.