Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5566

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 882 0.0
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 798 890 1.3E-13
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 182 373 1.7E-71
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 181 373 9.0E-83
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 161 1.6E-40
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 575 871 6.48E-63
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 18 872 0.0
Coils Coil Coil - - 443 463 -
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 579 796 9.5E-79
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 675 693 4.5E-30
CDD cd00009 AAA - - 212 367 4.34143E-15
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 630 648 4.5E-30
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 5.1E-9
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 737 751 4.5E-30
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 12 131 3.92E-18
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 229 374 2.4E-10
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 375 573 9.6E-52
Gene3D G3DSA:1.10.8.60 - - - 798 894 2.9E-9
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 552 7.17E-72
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 798 872 8.0E-14
Coils Coil Coil - - 525 552 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 579 796 1.1E-66
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 625 791 2.3E-38
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 588 796 5.85459E-91
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 626 785 3.2E-8
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 704 722 4.5E-30
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 465 2.7E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.