Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5569

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 730 764 5.4E-7
Gene3D G3DSA:2.180.10.10 - - - 873 1332 1.8E-82
NCBIfam TIGR03696 JCVI: RHS repeat-associated core domain IPR022385 Rhs repeat-associated core 1254 1333 5.8E-28
Gene3D G3DSA:2.60.200.60 - - - 85 228 3.5E-14
MobiDBLite mobidb-lite consensus disorder prediction - - 1002 1032 -
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 888 919 5.9E-4
Pfam PF03527 RHS protein IPR001826 RHS protein 1227 1263 3.6E-14
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 600 640 8.1E-8
Pfam PF20148 Domain of unknown function (DUF6531) IPR045351 Domain of unknown function DUF6531 295 374 8.6E-23
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1278 1298 5.4E-13
PANTHER PTHR32305 - - - 652 1334 8.4E-37
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 650 678 1.7E-6
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 748 785 1.4E-6
CDD cd14742 PAAR_RHS - - 100 228 8.33063E-24
Pfam PF05488 PAAR motif IPR008727 PAAR motif 173 217 1.1E-8
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 770 808 1.0E-4
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 685 723 3.9E-4
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1221 1241 5.4E-13
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 649 683 1.8E-9
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 730 767 1.3E-7
Pfam PF08808 RES domain IPR014914 RES domain 1366 1476 1.0E-11
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 671 699 2.8E-5
Gene3D G3DSA:2.180.10.10 - - - 733 872 3.7E-23
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 1141 1179 2.2E-6
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 579 615 1.8E-5
MobiDBLite mobidb-lite consensus disorder prediction - - 1002 1022 -
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 811 851 1.6E-9
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1301 1320 5.4E-13
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 794 826 3.8E-5
Gene3D G3DSA:2.180.10.10 - - - 468 732 1.8E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.