Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5571

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	705	745	1.5E-7
NCBIfam	TIGR03696	JCVI: RHS repeat-associated core domain	IPR022385	Rhs repeat-associated core	1259	1337	2.7E-24
Pfam	PF03527	RHS protein	IPR001826	RHS protein	1231	1267	1.0E-12
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	1121	1144	0.0026
Gene3D	G3DSA:2.180.10.10	-	-	-	787	948	1.6E-23
PRINTS	PR00394	RHS protein signature	IPR001826	RHS protein	1225	1245	8.1E-13
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	747	787	5.1E-8
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	604	635	1.3E-6
CDD	cd14742	PAAR_RHS	-	-	100	230	3.84477E-24
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	651	682	2.2E-6
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	726	766	1.8E-9
Pfam	PF05488	PAAR motif	IPR008727	PAAR motif	174	219	2.0E-8
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	670	703	6.8E-6
PRINTS	PR00394	RHS protein signature	IPR001826	RHS protein	1305	1324	8.1E-13
Gene3D	G3DSA:2.60.200.60	-	-	-	91	230	1.4E-13
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	578	614	3.6E-5
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	1145	1176	2.0E-5
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	705	741	8.3E-9
Pfam	PF20148	Domain of unknown function (DUF6531)	IPR045351	Domain of unknown function DUF6531	297	376	1.6E-20
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	667	698	2.6E-7
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	790	825	1.6E-8
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	489	525	1.1E-4
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	769	808	2.3E-5
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	890	922	1.2E-5
PANTHER	PTHR32305	-	-	-	482	638	2.4E-38
Pfam	PF14414	A nuclease of the HNH/ENDO VII superfamily with conserved WHH	IPR032869	WHH domain-containing protein	1403	1449	8.1E-15
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	934	969	0.0071
PRINTS	PR00394	RHS protein signature	IPR001826	RHS protein	1282	1302	8.1E-13
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	599	639	7.7E-9
SUPERFAMILY	SSF69304	Tricorn protease N-terminal domain	-	-	677	985	1.96E-5
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	890	919	4.0E-5
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	934	969	8.9E-5
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	810	850	6.6E-6
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	747	784	1.1E-6
Gene3D	G3DSA:2.180.10.10	-	-	-	949	1336	1.3E-75
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1011	1034	-
Gene3D	G3DSA:2.180.10.10	-	-	-	458	730	2.8E-39
NCBIfam	TIGR01643	JCVI: YD repeat (two copies)	IPR006530	YD repeat	789	818	4.6E-4
Pfam	PF05593	RHS Repeat	IPR031325	RHS repeat	652	677	4.2E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.