Pseudomonas sp. UW4, PputUW4_00080 (algB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuu02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 167 310 3.1E-8
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 10 448 1.2E-128
Coils Coil Coil - - 119 139 -
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 11 119 1.0E-28
Gene3D G3DSA:1.10.8.60 - - - 318 394 3.1E-25
Gene3D G3DSA:3.40.50.2300 - - - 1 141 6.9E-32
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 141 317 1.0E-67
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 9 192 2.28E-38
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 150 388 1.2E-69
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 9 120 1.5E-33
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 406 446 3.2E-9
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 142 317 1.7E-61
Gene3D G3DSA:1.10.10.60 - - - 406 448 1.3E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 360 448 2.76E-8
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 149 313 4.7E-62
FunFam G3DSA:3.40.50.2300:FF:000120 Alginate biosynthesis transcriptional regulator AlgB - - 2 140 6.6E-90
CDD cd00009 AAA - - 152 311 2.1119E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.