Pseudomonas sp. UW4, PputUW4_00385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 313 | 644 | 2.8E-96 |
| CDD | cd06225 | HAMP | - | - | 317 | 361 | 5.30338E-10 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 158 | 292 | 1.7E-19 |
| CDD | cd11386 | MCP_signal | - | - | 409 | 608 | 7.43214E-54 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 335 | 644 | 1.83E-76 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 310 | 361 | 6.8E-14 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 314 | 645 | 1.7E-74 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 313 | 367 | 7.3E-13 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 454 | 609 | 3.9E-42 |
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 49 | 275 | 7.8E-19 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 382 | 643 | 2.6E-73 |
| Coils | Coil | Coil | - | - | 618 | 638 | - |
| CDD | cd12912 | PDC2_MCP_like | - | - | 190 | 281 | 3.07754E-14 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 24 | 643 | 2.5E-118 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.