Pseudomonas sp. UW4, PputUW4_00392

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00563 EAL domain IPR001633 EAL domain 643 878 1.6E-74
SMART SM00052 IPR001633 EAL domain 637 883 1.9E-112
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 469 622 2.9E-38
Pfam PF13426 PAS domain IPR000014 PAS domain 355 457 1.3E-13
CDD cd00130 PAS IPR000014 PAS domain 353 455 5.03686E-8
SMART SM00065 IPR003018 GAF domain 192 341 1.9E-5
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 465 626 1.9E-33
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 345 464 3.0E-14
Gene3D G3DSA:3.30.450.20 343 467 1.2E-25
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 474 628 5.34E-41
CDD cd01948 EAL IPR001633 EAL domain 643 880 6.43851E-99
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 168 342 1.6E-19
CDD cd01949 GGDEF IPR000160 GGDEF domain 470 625 3.55205E-52
SUPERFAMILY SSF55781 192 338 5.15E-21
SMART SM00091 IPR000014 PAS domain 24 87 59.0
Gene3D G3DSA:3.30.70.270 468 639 3.3E-49
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 342 387 10.522
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 415 467 12.235
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 497 629 30.39
SMART SM00086 IPR001610 PAC motif 416 458 7.7E-4
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 350 456 2.26E-19
SMART SM00267 IPR000160 GGDEF domain 458 627 2.0E-51
Pfam PF01590 GAF domain IPR003018 GAF domain 193 331 6.4E-13
SMART SM00091 IPR000014 PAS domain 344 410 8.6E-5
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 642 891 7.59E-90
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 638 892 79.687
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 640 889 3.8E-100

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.