Pseudomonas sp. UW4, PputUW4_02185

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13185
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF18947
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00082
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF18947
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 410 502 0.0
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1354 1468 0.098
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 648 1618 0.0
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1014 1193 1.2E-43
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1062 1188 1.3E-35
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 492 672 1.27E-10
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1357 1437 2.8E-10
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 594 663 0.0
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 502 599 0.0
Gene3D G3DSA:1.20.120.1530 - - - 132 221 2.6E-16
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 648 1618 0.0
SMART SM00304 HAMP_11 IPR003660 HAMP domain 564 616 4.7E-4
Gene3D G3DSA:3.40.50.2300 - - - 1233 1346 4.2E-17
CDD cd16922 HATPase_EvgS-ArcB-TorS-like - - 1067 1186 9.487E-42
Gene3D G3DSA:1.20.120.1530 - - - 4 131 2.6E-15
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1232 1342 1.5E-14
Gene3D G3DSA:3.40.50.2300 - - - 1502 1620 4.1E-41
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1502 1618 2.13E-36
Pfam PF18947 HAMP domain IPR003660 HAMP domain 83 125 6.0E-6
CDD cd06225 HAMP - - 659 703 1.74693E-5
Gene3D G3DSA:1.10.287.130 - - - 911 1013 3.2E-21
Pfam PF18947 HAMP domain IPR003660 HAMP domain 181 241 1.9E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 288 340 1.2E-8
SMART SM00304 HAMP_11 IPR003660 HAMP domain 472 524 3.0E-7
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 502 599 0.0
Gene3D G3DSA:1.20.120.1530 - - - 494 611 8.1E-25
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 318 410 0.0
Pfam PF18947 HAMP domain IPR003660 HAMP domain 273 335 5.7E-9
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 11 226 0.0
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 594 663 0.0
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 132 305 1.2E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 99 156 20.0
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1503 1614 7.62228E-36
CDD cd00156 REC - - 1357 1437 5.39354E-10
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1130 1140 1.4E-13
PANTHER PTHR43711 TWO-COMPONENT HISTIDINE KINASE - - 227 318 0.0
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1172 1185 1.4E-13
CDD cd06225 HAMP - - 475 519 4.68273E-6
Pfam PF18947 HAMP domain IPR003660 HAMP domain 457 520 1.6E-8
Gene3D G3DSA:6.10.340.10 - - - 653 708 3.2E-6
Pfam PF18947 HAMP domain IPR003660 HAMP domain 365 427 1.3E-8
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1062 1187 1.8E-24
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 308 529 2.01E-14
CDD cd06225 HAMP - - 199 243 6.21048E-5
Gene3D G3DSA:3.40.50.2300 - - - 1350 1467 9.1E-13
SMART SM00304 HAMP_11 IPR003660 HAMP domain 2 59 44.0
CDD cd06225 HAMP - - 383 427 7.46842E-7
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1112 1126 1.4E-13
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 948 1011 2.41912E-12
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1247 1342 2.6E-10
SMART SM00304 HAMP_11 IPR003660 HAMP domain 656 708 1.2E-9
Coils Coil Coil - - 682 709 -
CDD cd06225 HAMP - - 567 611 4.02894E-5
Gene3D G3DSA:1.20.120.1530 - - - 222 313 6.7E-20
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1500 1614 1.8E-35
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 227 318 0.0
CDD cd06225 HAMP - - 291 335 2.82765E-7
SUPERFAMILY SSF55781 GAF domain-like - - 696 869 7.06E-26
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 948 1015 6.6E-15
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1147 1165 1.4E-13
Pfam PF18947 HAMP domain IPR003660 HAMP domain 549 611 1.3E-6
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1503 1613 6.9E-28
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 947 1015 5.7E-20
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1235 1346 5.12E-18
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 933 1015 1.0E-17
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 11 226 0.0
Pfam PF13185 GAF domain IPR003018 GAF domain 731 869 5.9E-16
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 709 885 3.2E-14
SMART SM00304 HAMP_11 IPR003660 HAMP domain 196 248 2.5E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 380 432 2.9E-9
Pfam PF18947 HAMP domain IPR003660 HAMP domain 642 704 5.9E-7
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 410 502 0.0
Coils Coil Coil - - 875 944 -
Gene3D G3DSA:1.20.120.1530 - - - 314 421 1.7E-24
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1004 1190 4.32E-38
PANTHER PTHR43711:SF23 HISTIDINE KINASE - - 318 410 0.0
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1354 1441 5.27E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.