Pseudomonas sp. UW4, PputUW4_02185

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00512
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13185
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06225 HAMP - - 475 519 5.27458E-6
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 492 672 1.27E-10
Gene3D G3DSA:3.40.50.2300 - - - 1350 1467 9.1E-13
Pfam PF13185 GAF domain IPR003018 GAF domain 731 869 5.9E-16
Pfam PF18947 HAMP domain IPR003660 HAMP domain 83 125 6.0E-6
CDD cd00156 REC - - 1357 1437 6.07524E-10
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1062 1187 1.8E-24
FunFam G3DSA:1.20.120.1530:FF:000002 Two-component osmosensing histidine kinase - - 410 509 7.6E-45
CDD cd06225 HAMP - - 291 335 3.18503E-7
Pfam PF18947 HAMP domain IPR003660 HAMP domain 549 611 1.3E-6
SMART SM00304 HAMP_11 IPR003660 HAMP domain 656 708 1.2E-9
Pfam PF18947 HAMP domain IPR003660 HAMP domain 273 335 5.7E-9
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1112 1126 1.4E-13
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1062 1188 1.3E-35
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 948 1011 2.72487E-12
Pfam PF18947 HAMP domain IPR003660 HAMP domain 642 704 5.9E-7
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1232 1342 1.5E-14
SMART SM00304 HAMP_11 IPR003660 HAMP domain 2 59 44.0
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 947 1015 5.7E-20
Gene3D G3DSA:3.40.50.2300 - - - 1502 1620 4.1E-41
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 933 1015 1.0E-17
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 308 529 2.01E-14
SMART SM00304 HAMP_11 IPR003660 HAMP domain 99 156 20.0
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1130 1140 1.4E-13
CDD cd16922 HATPase_EvgS-ArcB-TorS-like - - 1067 1186 1.06861E-41
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1147 1165 1.4E-13
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1247 1342 2.6E-10
SUPERFAMILY SSF55781 GAF domain-like - - 696 869 7.06E-26
Pfam PF18947 HAMP domain IPR003660 HAMP domain 365 427 1.3E-8
SMART SM00304 HAMP_11 IPR003660 HAMP domain 564 616 4.7E-4
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1503 1613 6.9E-28
Gene3D G3DSA:6.10.340.10 - - - 653 708 3.2E-6
Gene3D G3DSA:1.10.287.130 - - - 911 1013 3.2E-21
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 709 885 3.2E-14
Gene3D G3DSA:1.20.120.1530 - - - 4 131 2.6E-15
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1502 1618 2.13E-36
CDD cd06225 HAMP - - 199 243 6.99542E-5
FunFam G3DSA:1.20.120.1530:FF:000002 Two-component osmosensing histidine kinase - - 318 409 1.1E-43
Pfam PF18947 HAMP domain IPR003660 HAMP domain 457 520 1.6E-8
FunFam G3DSA:1.20.120.1530:FF:000002 Two-component osmosensing histidine kinase - - 590 704 3.8E-44
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1172 1185 1.4E-13
CDD cd06225 HAMP - - 383 427 8.41235E-7
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1354 1468 0.098
PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J - - 293 1619 0.0
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1354 1441 5.27E-12
CDD cd06225 HAMP - - 659 703 1.96772E-5
Gene3D G3DSA:1.20.120.1530 - - - 222 313 6.7E-20
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1004 1190 4.32E-38
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1014 1193 1.2E-43
Coils Coil Coil - - 875 944 -
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1357 1437 2.8E-10
Gene3D G3DSA:1.20.120.1530 - - - 314 421 1.7E-24
SMART SM00304 HAMP_11 IPR003660 HAMP domain 196 248 2.5E-7
CDD cd06225 HAMP - - 567 611 4.53815E-5
Gene3D G3DSA:3.40.50.2300 - - - 1233 1346 4.2E-17
SMART SM00304 HAMP_11 IPR003660 HAMP domain 288 340 1.2E-8
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 948 1015 6.6E-15
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 132 305 1.2E-7
Gene3D G3DSA:1.20.120.1530 - - - 494 611 8.1E-25
SMART SM00304 HAMP_11 IPR003660 HAMP domain 472 524 3.0E-7
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1235 1346 5.12E-18
FunFam G3DSA:1.20.120.1530:FF:000002 Two-component osmosensing histidine kinase - - 222 317 1.4E-42
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1503 1614 8.58566E-36
Coils Coil Coil - - 682 709 -
Gene3D G3DSA:1.20.120.1530 - - - 132 221 2.6E-16
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1500 1614 1.8E-35
Pfam PF18947 HAMP domain IPR003660 HAMP domain 181 241 1.9E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 380 432 2.9E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.