Pseudomonas sp. UW4, PputUW4_02192
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 305 | 462 | 2.7E-45 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 294 | 466 | 5.6E-58 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 290 | 466 | 2.8E-57 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 295 | 467 | 4.3E-50 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 307 | 464 | 5.29666E-65 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 310 | 464 | 3.69E-47 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 302 | 465 | 8.7E-50 |
| Coils | Coil | Coil | - | - | 277 | 307 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 269 | 466 | 9.7E-65 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.