Pseudomonas sp. UW4, PputUW4_02534

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0015562	efflux transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil	Coil	-	-	288	308	-
SUPERFAMILY	SSF56954	Outer membrane efflux proteins (OEP)	-	-	1	465	1.96E-98
PANTHER	PTHR30203	OUTER MEMBRANE CATION EFFLUX PROTEIN	-	-	4	470	5.1E-87
NCBIfam	TIGR01845	JCVI: efflux transporter outer membrane subunit	IPR010131	RND efflux system, outer membrane lipoprotein, NodT	9	462	3.8E-101
Gene3D	G3DSA:2.20.200.10	Outer membrane efflux proteins (OEP)	-	-	100	351	2.8E-117
Gene3D	G3DSA:1.20.1600.10	Outer membrane efflux proteins (OEP)	-	-	54	462	2.8E-117
Coils	Coil	Coil	-	-	141	168	-
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	281	460	5.8E-21
Coils	Coil	Coil	-	-	218	238	-
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	63	251	4.9E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.