Pseudomonas sp. UW4, PputUW4_02535 (mexF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042908 xenobiotic transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.2090.10:FF:000001 Efflux pump membrane transporter - - 183 281 8.7E-39
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 183 281 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 472 495 3.1E-95
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 185 274 1.18E-20
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 299 499 7.06E-52
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 683 868 2.3E-26
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 527 1035 0.0
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 581 682 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 394 418 3.1E-95
FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter - - 319 510 8.7E-75
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 576 682 1.26E-27
FunFam G3DSA:3.30.2090.10:FF:000007 Efflux pump membrane transporter - - 735 823 1.7E-52
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 447 470 3.1E-95
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 733 818 1.27E-19
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 138 333 5.23E-28
NCBIfam TIGR00915 JCVI: efflux RND transporter permease subunit IPR004764 Multidrug resistance protein MdtF-like 3 1050 0.0
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 735 823 0.0
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 10 526 0.0
FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter - - 40 143 3.2E-33
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 339 362 3.1E-95
Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain - - 683 882 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 632 646 3.1E-95
Pfam PF00873 AcrB/AcrD/AcrF family IPR001036 Acriflavin resistance protein 3 1038 0.0
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 40 831 0.0
FunFam G3DSA:3.30.70.1430:FF:000002 Efflux pump membrane transporter - - 581 682 6.7E-31
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 842 1037 6.54E-46
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 366 387 3.1E-95
Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like - - 135 334 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 38 56 3.1E-95
PANTHER PTHR32063 - IPR001036 Acriflavin resistance protein 1 1048 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 10 34 3.1E-95
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 41 134 1.62E-24
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 563 580 3.1E-95

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.