Pseudomonas sp. UW4, PputUW4_02536

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01730	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01730	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01730	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.40.420.20	-	-	-	278	369	1.4E-17
SUPERFAMILY	SSF111369	HlyD-like secretion proteins	-	-	52	291	1.7E-68
Gene3D	G3DSA:2.40.30.170	-	-	-	56	277	5.9E-66
Pfam	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion	IPR032317	RND efflux pump, membrane fusion protein, barrel-sandwich domain	62	287	2.9E-15
Coils	Coil	Coil	-	-	103	123	-
NCBIfam	TIGR01730	JCVI: efflux RND transporter periplasmic adaptor subunit	IPR006143	RND efflux pump, membrane fusion protein	38	368	7.7E-79
Coils	Coil	Coil	-	-	148	168	-
Gene3D	G3DSA:1.10.287.470	Helix hairpin bin	-	-	97	170	5.9E-66
FunFam	G3DSA:2.40.420.20:FF:000001	Efflux RND transporter periplasmic adaptor subunit	-	-	278	369	6.4E-25
FunFam	G3DSA:2.40.30.170:FF:000011	Efflux RND transporter periplasmic adaptor subunit	-	-	203	277	2.5E-41
PANTHER	PTHR30158	ACRA/E-RELATED COMPONENT OF DRUG EFFLUX TRANSPORTER	-	-	5	378	3.3E-120
Gene3D	G3DSA:2.40.50.100	-	-	-	62	205	5.9E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.