Pseudomonas sp. UW4, PputUW4_02632

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015031 protein transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01843
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01843
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 85 105 8.4E-50
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 375 398 8.4E-50
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 71 130 3.27E-5
PANTHER PTHR30386 MEMBRANE FUSION SUBUNIT OF EMRAB-TOLC MULTIDRUG EFFLUX PUMP - - 35 448 4.8E-62
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 420 435 8.4E-50
Coils Coil Coil - - 273 293 -
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 318 339 8.4E-50
MobiDBLite mobidb-lite consensus disorder prediction - - 1 30 -
NCBIfam TIGR01843 JCVI: HlyD family type I secretion periplasmic adaptor subunit IPR010129 Type I secretion membrane fusion protein, HlyD family 34 456 2.5E-109
Gene3D G3DSA:2.40.50.100 - - - 76 133 2.1E-6
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 43 66 8.4E-50
Gene3D G3DSA:2.40.30.170 - - - 313 438 1.8E-7
Pfam PF13437 HlyD family secretion protein - - 306 407 1.3E-13
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 351 375 8.4E-50
Pfam PF13533 Biotin-lipoyl like IPR039562 Membrane fusion protein, biotin-lipoyl like domain 77 120 9.9E-8
Coils Coil Coil - - 171 191 -
PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature - - 435 455 8.4E-50
Coils Coil Coil - - 199 219 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.