Pseudomonas sp. UW4, PputUW4_03084 (clpV)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07724	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00300	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppuu03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	605	623	1.4E-31
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	601	765	1.4E-39
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	369	459	1.7E-29
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	189	506	1.79E-68
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	369	548	6.6E-39
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	223	368	1.9E-12
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	650	668	1.4E-31
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	550	847	2.7E-58
Gene3D	G3DSA:1.10.8.60	-	-	-	772	868	2.6E-9
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	2	160	5.1E-43
Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	IPR004176	Clp, repeat (R) domain	23	66	0.0067
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	679	697	1.4E-31
FunFam	G3DSA:3.40.50.300:FF:000025	ATP-dependent Clp protease subunit	-	-	554	770	4.5E-77
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	175	367	4.2E-83
SMART	SM01086	ClpB_D2_small_2	IPR019489	Clp ATPase, C-terminal	772	865	7.0E-10
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	712	726	1.4E-31
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	228	340	3.6E-10
Coils	Coil	Coil	-	-	135	155	-
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	12	850	0.0
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	12	127	3.53E-19
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	177	367	9.1E-71
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	601	751	7.3E-10
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	562	731	6.26101E-75
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	554	769	3.1E-66
Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	IPR019489	Clp ATPase, C-terminal	773	850	1.2E-12
CDD	cd00009	AAA	-	-	206	366	1.16593E-17
Coils	Coil	Coil	-	-	437	457	-
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	16	853	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.