Pseudomonas sp. UW4, PputUW4_03088
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 204 | 224 | - |
| Pfam | PF05936 | Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE | IPR010263 | Type VI secretion system TssK | 18 | 448 | 0.0 |
| PANTHER | PTHR35566 | BLR3599 PROTEIN | IPR010263 | Type VI secretion system TssK | 1 | 450 | 3.7E-113 |
| NCBIfam | TIGR03353 | JCVI: type VI secretion system baseplate subunit TssK | IPR010263 | Type VI secretion system TssK | 5 | 448 | 1.3E-127 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.