Pseudomonas sp. UW4, PputUW4_03156
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 129 | 330 | 2.6E-113 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 25 | 343 | 1.49E-59 |
| CDD | cd13589 | PBP2_polyamine_RpCGA009 | - | - | 26 | 294 | 2.78726E-84 |
| Pfam | PF13416 | Bacterial extracellular solute-binding protein | IPR006059 | Bacterial extracellular solute-binding protein | 55 | 296 | 3.0E-39 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 28 | 324 | 2.6E-113 |
| PANTHER | PTHR30006 | THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED | - | - | 11 | 346 | 4.0E-38 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.