Pseudomonas sp. UW4, PputUW4_03256 (benB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006725 | cellular aromatic compound metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF00866
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu00364 | Fluorobenzoate degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu00622 | Xylene degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu00362 | Benzoate degradation | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu01220 | Degradation of aromatic compounds | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54427 | NTF2-like | IPR032710 | NTF2-like domain superfamily | 4 | 162 | 1.14E-53 |
| PANTHER | PTHR41534 | BLR3401 PROTEIN | IPR000391 | Ring-hydroxylating dioxygenase beta subunit | 5 | 160 | 5.8E-55 |
| Pfam | PF00866 | Ring hydroxylating beta subunit | IPR000391 | Ring-hydroxylating dioxygenase beta subunit | 14 | 154 | 3.5E-47 |
| NCBIfam | TIGR03232 | JCVI: benzoate 1,2-dioxygenase small subunit | IPR017641 | Benzoate 1,2-dioxygenase, small subunit | 8 | 162 | 1.2E-87 |
| CDD | cd00667 | ring_hydroxylating_dioxygenases_beta | IPR000391 | Ring-hydroxylating dioxygenase beta subunit | 5 | 161 | 5.49597E-57 |
| Gene3D | G3DSA:3.10.450.50 | - | - | - | 1 | 162 | 1.0E-47 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.