Pseudomonas sp. UW4, PputUW4_03258 (benR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 45 317 3.1E-35
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 228 314 2.8E-20
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 74 131 4.71E-5
Pfam PF14525 AraC-binding-like domain IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like 29 190 1.3E-20
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 234 316 2.5E-20
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 214 262 1.57E-6
Gene3D G3DSA:1.10.10.60 - - - 208 318 2.3E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.