Pseudomonas sp. UW4, PputUW4_04496
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 326 | 499 | 6.3E-71 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 198 | 294 | 5.62055E-23 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 248 | 499 | 5.6E-71 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 339 | 497 | 2.77605E-67 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 69 | 196 | 4.00927E-21 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 342 | 498 | 5.73E-48 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 324 | 499 | 1.2E-59 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 197 | 285 | 5.6E-21 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 332 | 499 | 3.8E-54 |
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 47 | 283 | 1.2E-13 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 334 | 499 | 1.2E-50 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 337 | 495 | 1.9E-48 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 41 | 194 | 1.8E-27 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.