Pseudomonas protegens Pf-5, PFL_0166

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 559 595 0.036
SUPERFAMILY SSF51126 Pectin lyase-like IPR011050 Pectin lyase fold/virulence factor 59 329 4.39E-64
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 713 754 1.5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 605 642 0.0049
Pfam PF13332 Hemagglutinin repeat IPR025157 Hemagglutinin repeat 2171 2346 9.4E-43
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1660 1699 8.4
SMART SM00912 Haemagg_act_2a IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 64 185 4.0E-49
Pfam PF13332 Hemagglutinin repeat IPR025157 Hemagglutinin repeat 1938 2094 4.8E-12
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1075 1116 0.048
Pfam PF05860 TPS secretion domain IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 54 307 1.1E-59
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1272 1314 0.5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 588 629 0.023
NCBIfam TIGR01901 JCVI: filamentous hemagglutinin family N-terminal domain IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 82 180 1.8E-18
Coils Coil Coil - - 2538 2558 -
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 402 471 5.2E-5
Pfam PF13332 Hemagglutinin repeat IPR025157 Hemagglutinin repeat 1862 1937 3.4E-9
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 893 928 0.0024
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1116 1152 0.0036
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 671 710 1.2E-7
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 696 747 0.35
Gene3D G3DSA:3.40.1350.120 - - - 2899 3037 1.9E-7
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 610 648 3.0E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 650 681 0.18
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1135 1173 1.1E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 822 845 0.4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 502 541 6.8E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 400 439 9.5E-8
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1097 1135 1.2
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1020 1085 65.0
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 630 670 0.095
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1194 1219 0.12
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 938 974 2.8
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1749 1783 0.021
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1680 1713 9.4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 462 499 5.2
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 847 887 9.8
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 782 803 0.36
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 550 586 0.0017
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 821 887 32.0
Pfam PF04829 Pre-toxin domain with VENN motif IPR006914 VENN motif-containing domain 2691 2740 2.5E-16
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 756 796 0.0012
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 486 548 0.65
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 899 937 1.7
MobiDBLite mobidb-lite consensus disorder prediction - - 1928 1958 -
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 441 481 0.71
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1181 1225 0.91
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1123 1174 7.4E-4
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 944 1009 2.5
Gene3D G3DSA:2.160.20.10 - IPR012334 Pectin lyase fold 51 345 3.3E-104
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1606 1690 0.11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.