Pseudomonas protegens Pf-5, PFL_0688

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0688
Name
Replicon chromosome
Genomic location 802267 - 802704 (- strand)

Cross-References

RefSeq YP_257830.2
GI 346642708
Entrez 3481277
INSDC AAY96095.2
NCBI Locus Tag PFL_0688
UniParc UPI000219FEA9
UniProtKB Acc Q4KIV3
UniProtKB ID Q4KIV3_PSEF5
UniRef100 UniRef100_Q4KIV3
UniRef50 UniRef50_I2BYR8
UniRef90 UniRef90_Q4KIV3

Product

Feature Type CDS
Coding Frame 1
Product Name
TadE family protein
Synonyms
Evidence for Translation
Charge (pH 7) 4.21
Kyte-Doolittle Hydrophobicity Value 0.346
Molecular Weight (kDa) 15.7
Isoelectric Point (pI) 9.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 9 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003895 (429 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0688

Human Homologs

References

No references are associated with this feature.